邓杰

研究领域：微生物生态学，分子生态学，微生物生物地理学，全球变化生态学。

研究兴趣与方向：微生物种间相互作用；土壤微生物和噬菌体病毒；微生物群落构建机制；微生物物种形成与进化。

欢迎具有生物化学、分子生物学、进化生物学背景的同学报考博士、硕士研究生。同时也欢迎有兴趣从事相关研究的本科同学与我们联系。

学习和工作经历：2006年本科毕业于北京大学，取得化学与生物学双学位。后赴美国密歇根州立大学微生物生态中心，于2011年取得生化与分子生物学博士，同时期取得统计学硕士。2012年进入俄克拉荷马大学环境基因组研究中心进行博士后研究。2016年受聘于华东师范大学并入选“紫江青年学者”。

论文：

Liu C, Ni B, Wang X, Deng Y, Tao L, Zhou X, Deng J^#. Effect of forest soil viruses on bacterial community succession and the implication for soil carbon sequestration. Science of the Total Environment.. 2023.

Chen Z, Huang Y^#, Shen Y, Zhang J, Deng J^#, Chen X. Denitrification shifted autotroph-heterotroph interactions in Microcystis aggregates. Environmental Research. 2023, 231(3):116269.

Gao D*, Chen Z*, Zhang J, Wang C, Ma Y, Wang J, Deng J#. Determinants of total and active microbial communities associated with cyanobacterial aggregates in a eutrophic lake. mSystems. 2023 Mar 16;e0099222.

Su X, Su X, Yang S, Zhou G, Ni M, Wang C, Qin H, Zhou X, Deng J#. Drought accelerated recalcitrant carbon loss by changing soil aggregation and microbial communities in a subtropical forest. Soil Biology and Biochemistry. 2020. 148:107898. 

Su X, Su X, Yang S, Zhou G, Ni M, Wang C, Qin H, Zhou X, Deng J#. Drought changed soil organic carbon composition and bacterial carbon metabolizing patterns in a subtropical evergreen forest. Sci Total Environ. 2020 Sep 20;736:139568. doi: 10.1016/j.scitotenv.2020.139568.

Deng J, Auchtung J, Konstantinidis KT, Brettar I, Höfle MG, Tiedje JM. Genomic variations across the diversification gradient of Shewanella baltica. mSystems. 2019. 4(5): e00560-19.

Deng J*, Auchtung J*, Caro-Quintero A, Konstantinidis KT, Brettar I, Höfle MG, Tiedje JM. Divergence in gene regulation contributes to sympatric speciation of Shewanella baltica strains. Applied and Environmental Microbiology. 2018.2, 84(4).

Deng J, Gu Y, Zhang J, Xue K, Yuan M, Qin Y, He Z, Wu L, Schuur EAG, Tiedje JM, Zhou J. Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska. Molecular Ecology. 2015, 24(1):222-34.

Deng J, Brettar I, Luo C, Auchtung J, Konstantinidis KT, Rodrigues JL, Höfle M, Tiedje JM. Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea. Environmental Microbiology. 2013, 16(6):1854-66.

Qu Y*, Ma Q*, Deng J*, Shen W, Zhang X, He Z, Van N J, Zhou J, Zhou, J. Responses of microbial communities to single-walled carbon nanotubes in phenol wastewater treatment systems. Environmental Science and Technology. 2015, 49(7):4627-4635

Niu J*, Deng J*, Xiao Y, He Z, Zhang X, Van N J, Liang Y, Zhou J, Liu X, Yin H. The shift of microbial communities and their roles in sulfur and iron cycling in a copper ore bioleaching system. Scientific Reports.2016 Oct 4(6):34744.

Hou J, Tang J, Chen J, Deng J, Wang J, Zhang Q. Evaluation of inhibition of lignocellulose-derived by-products on bioethanol production by using the QSAR method and mechanism study. Biochemical Engineering Journal. 2019. https://doi.org/10.1016/j.bej.2019.04.013. 

Li X, Li T, Meng D, Liu T, Liu Y, Yin H, Deng J, Zeng S, Shen L. Stochastic and deterministic drivers of seasonal variation of fungal community in tobacco field soil. PeerJ. 2019 Jun 14;7:e6962. DOI: 10.7717/peerj.6962. 

Hu A, Nie Y, Yu G, Han C, He J, He N, Liu S, Deng J, Shen W, Zhang G. Diurnal temperature variation and plants drive latitudinal patterns in seasonal dynamics of soil microbial community. Front Microbiol. 2019 Apr 2;10:674. 

Sun W, Xiao E, Krumins V, Dong Y, Li B, Deng J, Wang Q, Xiao T, Liu J. Comparative analyses of the microbial communities inhabiting coal mining waste dump and an adjacent acid mine drainage creek. Microbial Ecology. 2019 Oct;78(3):651-664. 

Yuan MM, Zhang J, Xue K, Wu L, Deng Y, Deng J, Hale L, Zhou X, He Z, Yang Y, Van Nostrand JD, Schuur EAG, Konstantinidis KT, Penton CR, Cole JR, Tiedje JM, Luo Y, Zhou J. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. Global Change Biology. 2018, Jan; 24(1):297-307.

Hambright W, Deng J, Tiedje J, Brettar I, Rodrigues J. Shewanella baltica ecotypes have a wide transcriptional variation under the same growth conditions. mSphere. 2016, Oct 19;1(5). pii: e00158-16.

Yin H, Niu J, Ren Y, Cong J, Zhang X, Fan F, Xiao Y, Zhang X, Deng J, Xie M, He Z, Zhou J, Liang Y, Liu X. An integrated insight into the response of sedimentary microbial communities to heavy metal contamination. Scientific Reports. 2015, Sep 22(5):14266.

Qu Y, Zhang X, Ma Q, Deng J, Deng Y, Van Nostrand JD, Wu L, He Z, Qin Y, Zhou J, Zhou J. Microbial community dynamics and activity link to indigo production from indole in bioaugmented activated sludge systems. PLoS One. 2015, 10(9):e0138455.

Caro-Quintero A, Auchtung J, Deng J, Brettar I, Höfle M, Tiedje JM, Konstantinidis KT. Genome sequencing of five Shewanella baltica strains recovered from the oxic-anoxic interface of the Baltic Sea. Journal of Bacteriology. 194(5):1236.

Caro-Quintero A, Deng J, Auchtung J, Brettar I, Höfle MG, Klappenbach J, Konstantinidis KT. Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella baltica from the Baltic Sea. The ISME Journal.(2011) 5:131-140.

Qin G, Ma Z, Zhang L, Xing S, Hou X, Deng J, Liu J, Chen Z, Qu LJ, Gu H. Arabidopsis AtBECLIN 1/AtAtg6/AtVps30 is essential for pollen germination and plant development. Cell Research.2007, 17:249–263.

项目主持：

国家自然科学基金面上项目，2022-2025

国家自然科学基金水圈培育项目，2020-2022

国家自然科学基金青年项目，2019-2021

上海市浦江人才计划，2017-2019

本科：《微生物生态学》、《生物化学》

研究生：《微生物生态学研究理论与方法》